Index

_

_run_bias_field_correction() (cBrainMRIPrePro.pipe.DataPreprocessing method) _run_coregistration() (cBrainMRIPrePro.pipe.DataPreprocessing method)

_run_normalize_z_score() (cBrainMRIPrePro.pipe.DataPreprocessing method) _run_resample_image() (cBrainMRIPrePro.pipe.DataPreprocessing method) _run_skull_stripping() (cBrainMRIPrePro.pipe.DataPreprocessing method)

A

apply_brain_mask() (cBrainMRIPrePro.pipe.DataPreprocessing static method)

C

cBrainMRIPrePro module cBrainMRIPrePro.pipe module cBrainMRIPrePro.utils module

cBrainMRIPrePro.utils.files module cBrainMRIPrePro.utils.image_processing module check_is_nii_exist() (in module cBrainMRIPrePro.utils.files) check_isdir() (in module cBrainMRIPrePro.utils.files) check_output_filename() (cBrainMRIPrePro.pipe.DataPreprocessing static method)

D

DataPreprocessing (class in cBrainMRIPrePro.pipe)

F

fill_mask() (in module cBrainMRIPrePro.utils.image_processing)

G

get_mask() (in module cBrainMRIPrePro.utils.image_processing)

I

invert_min_max_scaling() (in module cBrainMRIPrePro.utils.image_processing)

L

load_nifty_volume_as_array() (in module cBrainMRIPrePro.utils.files)

M

min_max_scaling() (in module cBrainMRIPrePro.utils.image_processing) module cBrainMRIPrePro cBrainMRIPrePro.pipe cBrainMRIPrePro.utils cBrainMRIPrePro.utils.files cBrainMRIPrePro.utils.image_processing

R

run_pipeline() (cBrainMRIPrePro.pipe.DataPreprocessing method)

S

safe_file_name() (in module cBrainMRIPrePro.utils.files) save_image() (cBrainMRIPrePro.pipe.DataPreprocessing static method)

save_to_nii() (in module cBrainMRIPrePro.utils.files) split_filename() (in module cBrainMRIPrePro.utils.files)

Z

zscore_normalize() (in module cBrainMRIPrePro.utils.image_processing)